miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|152046199|gb|EV420244.1|EV420244 GCACGAGGAGACGATATTGAAGCTCGACTCGAAGTGATTGACAATTTCGAGGCTCTTCTCAACGACAATAAATTCAGTGA
CATGTCGCTCATTTCGGGCGGCAAAGTCGTGAAGGTGCACAAGTGTATACTTGCAAAGAGCAGCTCAGTGTCTGCCGCAA
TGTTCGAAGCTGGTATGAAGGAAAGTCAAGAGAATACCGTTAAAATTCTTGATATCGAGTATGACGTTCTCGTGGAGATG
ACTCGCTTCGTTTATACTGGAAGGGCCAACAACATCAATGCATTGGTCAGTGAACTCGTGTTTGCAGCGGACAAATACGA
ACTTGACCTACTGAAGAAAGTGTGCGTAAATAAGATGCTAAAAAATATAAGCATCGACAATGTCATCGATTATCTTCAGA
TCGCCGACAAACTCCGGATAGAAGAGCTAAGGGAGGAAGCTATTAAGTTTATTGTTGAAAAAGGGAGGAGTGATGTTACT
GACAAACCAGAGTTTAAGTTTCTGCCTCATAATATCATGTACAAAGTGTGCTGTGGTTTGTCGAGAAAGGACAAATAGTT
AATTTGTTGGTATTACCTATATTATATTTTAATAAGATTCTTATATTAACTAATAAACTTTACTTCGTCAAAAAAAAAAA




Most similar to sp|A0JMG1|SPOLB_DANRE

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|A0JMG1|SPOLB_DANRE Speckle-type POZ protein-like B OS=Danio
           rerio GN=spoplb PE=2 SV=2
          Length = 392

 Score =  113 bits (283), Expect = 9e-25
 Identities = 61/141 (43%), Positives = 88/141 (62%)
 Frame = +1

Query: 31  EVIDNFEALLNDNKFSDMSLISGGKVVKVHKCILAKSSSVSAAMFEAGMKESQENTVKIL 210
           ++ D+   L   ++F+D SL  GG+  K HK ILA  S V  AMFE  M+ES++N V I 
Sbjct: 185 QLSDDLGNLWEGSRFTDCSLFVGGQEFKAHKSILAARSPVFNAMFEHKMEESKKNRVDIS 244

Query: 211 DIEYDVLVEMTRFVYTGRANNINALVSELVFAADKYELDLLKKVCVNKMLKNISIDNVID 390
           D+E DV  EM  F+YTG+A N+  +   L+ AADKY L+ LK +C   +  ++S++NV D
Sbjct: 245 DVEPDVFREMMVFIYTGKAPNLEKMADNLLAAADKYALERLKVLCEEALCNSLSVENVAD 304

Query: 391 YLQIADKLRIEELREEAIKFI 453
            L +AD    E+L+ +AI FI
Sbjct: 305 VLILADLHSAEQLKAQAIDFI 325